Removing lines from a file

Shell Programming and Scripting
1

I have a file `/tmp/wrk` containing filenames with paths. I want to remove filenames
from this file, for example

remove all filenames containing alja cagr cavt clta cmdo or corl

remove all filenames containing data for days in region `d.2016.001` to `d.2016.207`
remove all filenames containing data for days in region `d.2016.282` to `d.2016.356`

The tag represent data files for 2016 for each day (day1 to day 356),
i.e., from `d.2016.001` to `d.2016.356`

I want to keep only files in region `d.2016.208` to `d.2016.281`

Basically I want to process the files in this file by reading it and looping
each file in a do loop using bash. But as I have so many files, I want to
remove the ones I do not need from the file `/tmp/wrk`

more /tmp/wrk
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.269
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.163
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.165
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.199
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.127
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.017
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.003
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.266
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.274
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.147
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.103
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.349
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.261
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.337
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.172
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.175
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.342
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.067
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.069
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.233
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.278
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.265
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.078
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.109
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.168
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.079
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.030
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.119
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.034
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.121
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.032
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.058
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.351
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.186
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.260
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.171
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.024
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.270
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.257
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.264
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.173
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.108
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.092
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.253
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.004
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.001
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.201
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.005
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.244
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.120
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.068
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.187
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.044
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.164
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.346
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.271
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.007
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/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.047
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.203
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.241
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.060
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.040
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.249
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.191
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.130
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.077
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.202
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.113
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.116
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.012
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.238
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.081
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.159
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.086
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.242
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/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.099
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.355
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.010
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/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.082
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/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.259
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.356
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.149
/media/hagbard/DS521260/ingv/iv/ptcc/hhz.d/iv.ptcc..hhz.d.2016.025
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2

You have started well over 300 threads in the last seven years. You know what is needed for us to be able to help you efficiently:

  1. The operating system you're using (which you have not provided).
  2. The shell you're using (which you have provided).
  3. Names of files to be processed (which you have not provided).
  4. A clear statement of what you're tying to do (which you have not provided).
  5. A representative sample input file (which you have not provided).
  6. The output that you hope will be produced from your sample input (which you have not provided).
  7. The code that you have tried to solve this problem on your own (which you have not supplied). And any output (normal and diagnostic) produced by the code you have tried.

Please add another post to this thread filling in the missing information!

Note that you have said you want to remove files; but you have not made it clear whether that means that you want to physically remove files from your system, you just want to remove the names of those files from the file containing your list of filenames, or you just want to exclude those files while you process other filenames contained in file containing your list of filenames in a loop in your bash shell script.

Please don't make us guess at what you're trying to do. Tell us up front so we don't all waste our time suggesting solutions to problems unrelated to what you're trying to do.

1 Like
3

Apologies Don

---------- Post updated at 05:54 PM ---------- Previous update was at 05:43 PM ----------

And I am using GNU Trisquel

This seems to work when I try to remove filenames with data recorded from the specified station names.

arg_delstn="ptcc nov"
IFS=' ' read -r -a delstn <<< "$arg_delstn"
for stn in "${delstn[@]}"
do
  rgx="/${stn}/d" 
  echo "sed -i $rgx /tmp/wrk"
  sed -i $rgx /tmp/wrk
done

Removing days in ranges is quite a challenge. No good ideas yet.

---------- Post updated at 07:25 PM ---------- Previous update was at 05:54 PM ----------

For some reason the following removed me all the filenames

for day in {1..207}
do    
  if (( day < 10 )); then
    daytag="00$day" 
  elif (( day < 100 )); then
    daytag="0$day" 
  else
    daytag="$day"
  fi
  rgx="/.${daytag}/d" 
  echo "sed -i $rgx /tmp/wrk"
  sed -i $rgx /tmp/wrk  
done

for day in {282..356}
do    
  if (( day < 10 )); then
    daytag="00$day" 
  elif (( day < 100 )); then
    daytag="0$day" 
  else
    daytag="$day"
  fi
  rgx="/.${daytag}/d" 
  echo "sed -i $rgx /tmp/wrk"
  sed -i $rgx /tmp/wrk  
done
4

What are you trying to match with . in the basic regular expressions you are creating to be used as addresses in sed ? What characters does a <period> in a BRE match? Each of the following sed commands will remove every line in the current sample /tmp/wrk file you now have in post #1 in this thread.

sed -i /.212/d /tmp/wrk
sed -i /.126/d /tmp/wrk
sed -i /.260/d /tmp/wrk
sed -i /.201/d /tmp/wrk
sed -i /.016/d /tmp/wrk

Your last script in post #3, update #3 doesn't currently use .212 or .260 ; but it does use the other three.

Maybe you'd like to try the following replacement for that script and see if it works any better for you:

for day in {1..207} {282..356}
do    
  if (( day < 10 )); then
    daytag="00$day" 
  elif (( day < 100 )); then
    daytag="0$day" 
  else
    daytag="$day"
  fi
  rgx="/[.]${daytag}$/d" 
  echo "sed -i \"$rgx\" /tmp/wrk"
  sed -i "$rgx" /tmp/wrk  
done

PS: Note that editing a file a few hundred times with sed is grossly inefficient. You would probably be better off using ed or ex to edit your file once feeding global editing commands to one invocation of that editor and after all of the updates have been completed, add a w command at the end to write all of the updates back to your input file. Running ed once instead of running sed about 290 times will be MUCH faster.

5

I want to remove files ending with

.001 to .207
.282 to .356

6

.016 will also match with 2016 and delete everything

You could build a filter file and use 1 grep command - probably a lot faster than all those sed commands:

printf "\\.%s\$\n" {001..207} {282..356} > /tmp/filt$$
grep -i -v -f /tmp/filt /tmp/wrk > /tmp/wrknew$$
rm /tmp/filt$$
mv /tmp/wrknew$$ /tmp/wrk

Notice how a backslash in front of the . is used to represent an actual dot character not a wild card.

7

Fine. Then try the code I suggested in post #4, or the following code which I hinted to in the postscript:

{ for day in {1..207} {282..356}
do    
  if (( day < 10 )); then
    daytag="00$day" 
  elif (( day < 100 )); then
    daytag="0$day" 
  else
    daytag="$day"
  fi
  echo "g/[.]$daytag$/d" 
done
echo w
echo q
} | ed -s /tmp/wrk
8

It is 3 times faster when using `ed`.

9 
$ grep -Pie '.+?d\.2016\.2(0[89]|[1-7][0-9]|8[0-2])' /tmp/wrk >/tmp/wrk_done

if you want to sort in days order

$ grep -Pie '.+?d\.2016\.2(0[89]|[1-7][0-9]|8[0-2])' /tmp/wrk |sort -o/tmp/wrk_done -t. -k7n
10 
# use with python3
#
import os

# list of ranges to exclude
exclude_ranges = [(1, 207), (282, 356)]

# list of patterns to exclude
exclude_names_with = ['alja', 'cagr', 'cavt', 'clta', 'cmdo', 'corl']

def extension_day(file):
    return int(os.path.splitext(file)[1][1:])

def is_range(day_number, r):
    return r[0] <= day_number <= r[1]


with open('wrk', 'r') as read_file:
    for path_line in read_file:
        good = True
        basename = os.path.basename(path_line)
        day = extension_day(basename)

        # filter names with excluded patterns
        for s in exclude_names_with:
            if s in basename:
                good = False
                break
        # filter names in the excluded ranges unless not good
        if good:
            for r in exclude_ranges:
                if is_range(day, r):
                    good = False
                    break
        # write only if still good
        if good:
            print(path_line, end='')
11

How far would

grep -Ev -e "/(alja|cagr|cavt|clta|cmdo|corl)/" -e "\.([013]..|2(0[0-7]|8[2-9]|9[0-9]))$" /tmp/wrk

get you? By the way - wouldn't it make sense to apply this already when creating the work file?