Hi ,
I have input file as XML. following are input data
#complex.xml
Code:
<?xml version="1.0" encoding="UTF-8"?><TEST_doc xmlns="http://www.w3.org/2001/XMLSchema-instance"> <ENTRY uid="123456"> <protein> <name>PROT001</name> <organism>Human</organism> <class>cytoplasmic</class> </protein> <xrefs> <xref> <database>Ensembl</database> <accn>ENSG00000105829</accn> </xref> <xref> <database>UNIPROT</database> <accn>Q12345</accn> </xref> </xrefs> </ENTRY> <ENTRY uid="45678"> <protein> <name>PROT002</name> <organism>Human</organism> <class>nuclear</class> </protein> <xrefs> <xref> <database>Ensembl</database> <accn>ENSG00000105333</accn> </xref> <xref> <database>UNIPROT</database> <accn>Q14789</accn> </xref> </xrefs> </ENTRY></TEST_doc>
i want to extract data from this file and i tried below query.
cat complex.xml | xml sel -t -m //xref -v "concat(../../protein/name,' ',../../protein/class,' ',./database,' ',./accn)" -n
but it is not giving any output...but this query is working when instead of xmlns i am writing xmlns:xsi="...."
but my input file is having only xmlns="..."
please help me ...
Thanks in advance..