I think you simply need to quote the variable you're echo-ing. Let me know if this is of any help.
$ #simulating multi-line output
$ echo "abc def
ab cd ef
123 456 789"
abc def
ab cd ef
123 456 789
$
$ #assigning multi-line output to a variable
$ var=$(echo "abc def
> ab cd ef
> 123 456 789")
$
$ #echo-ing unqouted variable
$ echo $var
abc def ab cd ef 123 456 789
$
$ #echo-ing quoted variable
$ echo "$var"
abc def
ab cd ef
123 456 789
$