Linux Server
Hi!
just some help...
I'm using a "Sun Grid Engine" with "qsub"
In one hand I have this code
while read -r H; do echo ${H}; done < list
The number of the lines in the list file is 100.
On the other hand I want to create a job array with the option -t
echo "echo $H" | qsub -N loop -t 1-100
How can I merge the two codes? In the way to create a job array (1-100) where each job read a line from the list file...?
Many thanks
It's not entirely clear what you are after here. Can you show us a worked example if list file contained 3 lines like this
harry
bob
mary
For example you may want -t value incremented for each line something like this:
echo "harry" | qsub -N loop -t 1
echo "bob" | qsub -N loop -t 2
echo "mary" | qsub -N loop -t 3
Hi,
with your code are 3 different jobs and not three jobs in one array
job-ID prior name user state submit/start at queue slots ja-task-ID
372502 1.00000 loop manolis r 03/09/2018 11:19:58 all.q@localhost 1 1
372503 1.00000 loop manolis r 03/09/2018 11:19:58 all.q@localhost 1 2
372504 1.00000 loop manolis r 03/09/2018 11:19:58 all.q@localhost 1 3
I tried with 20 jobs
job-ID prior name user state submit/start at queue slots ja-task-ID
372527 0.00000 loop manolis qw 03/09/2018 11:26:01 1 1
372528 0.00000 loop manolis qw 03/09/2018 11:26:01 1 2
372529 0.00000 loop manolis qw 03/09/2018 11:26:01 1 3
372530 0.00000 loop manolis qw 03/09/2018 11:26:01 1 3
372531 0.00000 loop manolis qw 03/09/2018 11:26:01 1 4
372532 0.00000 loop manolis qw 03/09/2018 11:26:01 1 5
372533 0.00000 loop manolis qw 03/09/2018 11:26:01 1 6
372534 0.00000 loop manolis qw 03/09/2018 11:26:01 1 7
372535 0.00000 loop manolis qw 03/09/2018 11:26:01 1 8
372536 0.00000 loop manolis qw 03/09/2018 11:26:01 1 9
372537 0.00000 loop manolis qw 03/09/2018 11:26:01 1 10
372538 0.00000 loop manolis qw 03/09/2018 11:26:01 1 11
372539 0.00000 loop manolis qw 03/09/2018 11:26:01 1 12
372540 0.00000 loop manolis qw 03/09/2018 11:26:01 1 13
372541 0.00000 loop manolis qw 03/09/2018 11:26:01 1 14
372542 0.00000 loop manolis qw 03/09/2018 11:26:01 1 15
372543 0.00000 loop manolis qw 03/09/2018 11:26:01 1 16
372544 0.00000 loop manolis qw 03/09/2018 11:26:01 1 17
372545 0.00000 loop manolis qw 03/09/2018 11:26:02 1 19
372546 0.00000 loop manolis qw 03/09/2018 11:26:02 1 20
What I need is something like this:
372546 0.00000 loop manolis qw 03/09/2018 11:26:02 1 1-20
where the script "loop" read the 20 line (names in this case) from a file (each line would be a job of an array job)
How about:
qsub -N loop -t 1-100 < list