I've not had to do a flar restore but you can instruct JET (sun jumpstart framework) to use a flar by setting the base_config_products to "flash sds" (and provide the same SDS settings you used for the first jumpstart) and flash_archive_locations to an NFS url for your flar.
If you still want to take a backup of the data via the devices, you can either provide one of the two mirrors or the mirror metadevice itself, either will work just fine. When you do the restore, you can just restore it onto the main mirror metadevice, or if that's not created yet, the real disk device then mirror it up again. SDS is quite flexible like that
Sing out if you need a hand with the process of breaking off a submirror or remirroring after the restore without interrupting service etc.